This phenomenon is also observed in the mouse model of LCMV High

This phenomenon is also observed in the mouse model of LCMV. High-dose viral infection led to clonotypic switching in the repertoire of epitope-specific cells and emergence of dominant T cells with intermediate and low sensitivity in chronic infection [66]. The affinity of the TCR, a fixed property of the cell, plays an important role in determining

CTL sensitivity. However, the overall triggering threshold of a T cell in response to peptide is determined not only by the Torin 1 chemical structure affinity of the TCR, but seems to be regulated. Naive CTLs have inherent differences in sensitivity to peptide, pre-determining the ability of a given CTL repertoire to clear infection; interindividual difference in outcome from viral infection are thus influenced by inherent differences in the quality of the host’s T cell repertoire. Differences in functional sensitivity are not seen after stimulation of naive CTLs from TCR transgenic mice with varying levels of peptide antigen. Paired daughter clones from CTLs were, however, able to give rise to populations of cells of distinct sensitivity dependent upon the level of antigen used to maintain the clones [11]. Such plasticity would enable peptide selleck products sensitivity to be tuned in response to the level of antigen

presented, while at the same time provide protection against apoptosis induced by high amounts of peptide. This may explain the observation of loss of CTL function at high viral doses [67–69], suggesting that sensitivity is tuned down. Such a phenomenon may be explained by the inducible expression of the inhibitory co-stimulatory

molecule programmed death-1 (PD-1) with Lumacaftor purchase antigen exposure. Expression is up-regulated markedly on antigen-experienced CTLs in both HIV [70] and HCV [71], as well as LCMV [72]. Previous infection with viruses containing sequences that partially cross-react has been observed to influence the subsequent response to heterologous infection – so-called heterologous immunity. This has been observed in some murine models, and includes viruses which are quite unrelated genetically [73]. The overall impact of this process in human infection is not understood fully, and in particular the quality of such responses has not been examined in detail. It has been suggested that such responses may skew the subsequent response to a pathogen and lead to immunopathology. We have recently examined one of the best-documented examples of this in HCV using pMHCI with modified CD8 binding (‘magic tetramers’) as described above [47]. The response concerned is specific for an immunodominant and highly conserved epitope in HCV NS3. Tetramers created using this peptide bind only in the presence of an intact CD8 recognition site, indicating that this is a low-avidity response in natural infection. Responses to the HCV-NS3 epitope have been reported to cross-react with an epitope derived from influenza virus neuraminidase protein (Flu-NA).

047; Fig 4B) Therefore, IL-7 secretion by leukemic cells contri

047; Fig. 4B). Therefore, IL-7 secretion by leukemic cells contributes to the survival of CML-specific CTL. Our results in a murine CML model

using LCMV-gp33 as model leukemia antigen suggested that IL-7 signaling maintains CML-specific CTL and may contribute to disease control. LCMV-gp33 is a foreign antigen, which is expressed in the H8 transgenic mice under a relatively strong promoter. Therefore, the model leukemia antigen used has many similarities to the junction peptides derived of BCR/ABL, which are similarly learn more expressed under a strong promoter and are novel antigens without pre-existing self-tolerance. Nevertheless, the H8-CML model might overestimate the contribution of IL-7 signaling and CD8+ T-cell control. To test the physiological role of IL-7 in CML control, IL-7-deficient bone marrow or C57BL/6 bone marrow was transplanted to irradiated C57BL/6 recipient mice. IL-7−/−-CML mice died within 30 days after bone marrow transplantation (Fig. 5A). On the contrary, selleck chemicals C57BL/6-CML mice survived significantly longer

(p=0.02). A similar retroviral transduction efficiency of IL-7-deficient and C57BL/6 donor bone marrow cells was confirmed by FACS analysis 3 days after spin-transfection (Fig. 5B). Taken together, these results indicate that IL-7 production by leukemic cells improves the immunological control of CML, in the absence of model antigen gp33. Specific CTL participate in the control of CML without eradicating the disease completely 6, 7, 20. In fact, CML disease is characterized by a chronic phase of 3–5 years during which a specific CTL response coexists with the CML and probably controls the disease. This is followed by the transition to blast crisis. The mechanisms which control this delicate balance between the immune system and the leukemia are largely unknown. Adoptive transfer

experiments revealed that a large fraction of specific CTL disappeared from the circulation and from the lymphoid organs. This process has also been documented for chronic viral infections, and is referred to as exhaustion19, 21–26. The phenotype of CTL that resist physical old deletion in the presence of a chronic infection has been analyzed before. These CTL were characterized by varying degrees of functional impairment, such as the lack of cytotoxic activity and a reduced capacity to produce IFN-γ 21, 22. However, if partially exhausted and dysfunctional T cells still contribute to disease control is less clear and is often difficult to assess in the presence of a chronic infection. Indications that partially exhausted CTL are of importance for disease control come from experiments with rhesus macaques infected with SIV. Animals which were depleted of CD8+ T cells by monoclonal antibody had significantly higher viral loads 27. We now analyzed the relevance of partially exhausted CTL in the control of CML.

This protein subset was PCR-amplified,

This protein subset was PCR-amplified, PI3K inhibitor cloned into a T7 bacterial vector, the plasmids were purified and the proteins expressed using an in vitro cell-free Escherichia coli system. A total of 222 cell-free proteins from both species were contact printed onto nitrocellulose glass slides. This protein microarray can then be probed with infection sera, ASC-probes or other sources of antibody, such as bronchoalveolar lavage fluid. Reactive antigens have already been identified by immunoscreening of the schistosome protein microarray with infected mouse, rat and human sera (80,81; Driguez P. and McManus D.P., unpublished data). By combining both S. japonicum

and S. mansoni proteins on the microarray, we can take advantage of shared orthologues and cross-species reactivity

when screening with infection sera from any species. While the current set of microarray Panobinostat price proteins is relatively small, future versions could readily incorporate thousands of proteins. Compared to conventional proteomics techniques, the benefits of using this immunomics protein microarray system include: small sample volumes are needed, typically for serum only 1–2 μL; there are no biases because of variable protein abundance from in vitro pathogen culturing or protein extract purification/separation methods (e.g. 2D-PAGE); easy identification of reactive antigens; low technical difficulty; and easy adaptability to PAK5 high-throughput screenings. There are, however, limitations such as: the need for complex data and statistical analysis; loss of some epitopes because of missing post-translational modifications or disulphide bonds and incorrect folding; and missing carbohydrate and lipid moieties that are present on native proteins (68,80). Similar immunomics protein microarrays have been manufactured for entire or partial proteomes of 25 bacterial, viral and parasitic pathogens (68), and these have proven to be effective vaccine and diagnostic discovery tools. Studies

with numerous pathogen protein microarrays have revealed that antigens that are exposed to the host immune system, such as signal peptide proteins and extracellular proteins, are over-represented in the set of reactive proteins compared with the proteome (68). A Francisella tularensis microarray identified 11 of the 12 antigens discovered previously using protein gels and mass spectroscopy plus an additional 31 completely new antigens (68). Antibodies from mice immunized against Chlamydia trachomatis recognized 185 proteins consisting of previously described protective antigens, and new hypothetical and unstudied proteins (82). This approach has also been employed for immunomic studies on malaria, where significant progress has been made using protein microarrays (67); here, the arrays were probed with sera from individuals displaying varying degrees of immunity.

An alternative

mechanism whereby neutrophils eliminate Le

An alternative

mechanism whereby neutrophils eliminate Leishmania parasites was proposed very recently, and involves the generation of neutrophil extracellular traps, which are webs composed of chromatin and granular proteins 34. However the most likely mechanism is that TLR-9-expressing neutrophils become activated by CpG DNA and increase (i) their ability to activate macrophages (ii) their phagocytic and killing capacity 35. We will study changes in neutrophil activation by the Lm/CpG vaccine in future studies. In summary, the present study suggests that IL-17 may become an important modulator of Leishmania infection. Elucidating the mechanisms involved Stem Cell Compound Library in Th17 generation and those that undermine T-cell lineage crossregulation

will not only clarify the flexibility of T-cell differentiation, but may also shed insight into the pathogenesis of disease. Furthermore, understanding these phenomena will be critical for the design of immunotherapy that seeks to disrupt Protease Inhibitor Library screening lineage-specific T-cell responses and may suggest ways to manipulate the balance between pathogenic and regulatory lymphocytes for the restoration of homeostasis. Six to eight wk old C57BL/6 and IL-17R−/− (C57BL/6 background) mice were purchased from Taconic (Germantown, NY). All mice were maintained in the Baker Institute Animal Care Facility under pathogen-free conditions. L. major clone V1 (MHOM/IL/80/Friedlin) promastigotes were grown at 26°C in medium 199 supplemented as described in 11. Infective-stage promastigotes of L. major were isolated

from stationary cultures (4–5 day-old) by Ficoll enrichment 36. Mice were vaccinated intradermally in both ears with 104L. major alone or in combination with 50 μg CpG DNA (5′ TCC ATG ACG TTC CTG ACG TT-3′, IDT, Coralville, IA) using a 27 1/2 G needle in a volume of 10 μL 10. Single cell suspensions from the ear dermis were obtained and processed as in Amisulpride 12. Briefly, the ear sheets were separated and deposited in DMEM containing Liberase CI enzyme blend (0.5 mg/mL) for 60 min at 37°C. The sheets were then cut and dissociated using a tissue homogenizer. For parasite titrations, a fraction of the homogenates were serially diluted in a 96-well flat bottom microtiter plate containing biphasic medium prepared using 50 μL Novy-MacNeal-Nicolle (NNN) medium containing 20% of defibrinated rabbit blood. The number of viable parasites in each sample was estimated from the highest dilution at which promastigotes could be grown out after 7 days of incubation at 26°C. For the analysis of the relative abundance of cell populations in the ears, single cell suspensions were generated as described above. In most experiments, ears were pooled to obtain enough cells for flow cytometry and microscopy assays. This will be indicated in each figure. Differential counts were performed manually on Giemsa-stained cytocentrifuge preparations.

Interestingly, CCL25 specifically triggered tissue accumulation o

Interestingly, CCL25 specifically triggered tissue accumulation of a subpopulation of γδ T lymphocytes that presents Th17 phenotype and expresses CCR9 and α4β7 integrin, which is required for their migration into the tissue. Using the experimental model of allergic pleurisy, we have previously demonstrated that CCL25 levels increase during allergic response [[11]]. Here, we show that mesothelial cells are likely the major source of CCL25

during pleural allergic reaction. Indeed, mesothelial cells are epithelial-like cells that have been shown to play an active role in inflammation via the release of cytokines and chemokines [[30]]. In accordance, it has been shown that CCL25 is predominantly expressed by epithelial cells from mouse gut and thymus stroma [[25]]. It is interesting to note that Tanespimycin cost IL-4 induced the CCL25 production by mesothelial cells recovered from immunized mice (but not from naïve mice), suggesting that these cells might be more responsive due to priming during immunization. In fact, the correlation Dorsomorphin concentration between CCL25/CCR9 axis with Th2 response has been previously exposed in a few reports. IL-4 has been shown to drive increased expression of CCR9 on murine T lymphocytes when cocultured with dendritic

cells, which was mediated by dendritic cell-derived retinoic acid [[31, 32]]. The involvement of CCR9 in allergy has been shown in allergic asthma patients, whose bronchial biopsies present

higher numbers of CCR9+ natural killer T (NKT) cells than the ones of nonasthmatic subjects. In addition, CCR9+ NKT cells recovered from the peripheral blood of these patients migrated in vitro toward CCL25 [[33]]. Herein, we found that during allergic reaction, CCR9+ γδ T lymphocytes accumulated in mouse pleura, suggesting the involvement of CCR9/CCL25 in γδ T-cell migration and/or activation during allergy. Interestingly, the in vivo neutralization of CCL25 selectively inhibited the migration of a subpopulation of α4β7+ γδ T lymphocytes, but failed to diminished total γδ or αβ T-cell counts in the pleura during allergic inflammation. Indeed, in a previous report, we demonstrated that CCR2/CCL2 is mainly required for γδ T-cell migration during allergy [[11]]. To address Resveratrol this issue, we analyzed the expression pattern of chemokine receptors by the α4β7+ γδ T-cell population from OVA-challenged mouse pleura. We observed that 40% of such population expresses CCR9, whereas only 10% of those cells express CCR2, and 20% expresses CCR6. In accordance, CCL25 i.pl. injection only attracted α4β7+ γδ T lymphocytes expressing CCR6 and CCR9, but not CCR2 (Supporting Information Fig 4). CCR9/CCR6 coexpression has been previously demonstrated [[6, 34]] and characterized as a phenotype of IL-17 producers in the intestine [[35]].

While CX3CR1 is clearly involved in their survival, S1PR5 is rath

While CX3CR1 is clearly involved in their survival, S1PR5 is rather implicated in their egress from the BM although it may also contribute indirectly in their survival. Finally, we investigated the role of S1P in the physiology of Ly6C− monocytes using in vitro and in vivo experiments. In vitro, we measured responsiveness of monocytes to S1P gradients in chemotaxis chambers. No consistent migration of either population of monocytes was observed (Fig. 5A),

whereas both monocyte populations migrated in response to CCL2 gradients (Fig. 5B). In the same experiments, NK cells migrated in response to both S1P and CCL2 gradients (Fig. 5A and B), as CHIR-99021 previously reported [16]. WT and S1pr5−/− Ly6C− monocytes migrated equally to CCL2 gradients, excluding a possible cross talk between CCR2 and S1PR5 (Fig. 5C). We also cultured Ly6C− monocytes with S1P at concentrations similar to those observed in vivo. The addition of S1P at any concentration did not change monocyte viability in vitro (Fig. 5D and data not shown). Next, we treated mice with the sphingosine lyase inhibitor deoxypyridoxine (DOP), which has been shown to dramatically increase S1P levels in tissues and disrupt

S1P gradients in vivo [22]. Upon treatment with DOP, peripheral T-cell numbers dropped, as previously reported [22]. However, DOP had no effect on the trafficking or the number of Ly6C− monocytes (Fig. 5E) and NK cells [22] even selleckchem after prolonged (10 days) treatment (Fig. 5E). The ex vivo viability of blood and BM Ly6C− monocytes was not modified either (Fig. 5F). Altogether, these results suggest that S1P and S1P gradients are not involved in monocyte Nintedanib (BIBF 1120) survival and unexpectedly not in their trafficking. In this article, we report for the first time a high expression of S1PR5 in patrolling monocytes and the paucity of these cells in the peripheral compartment of S1pr5−/− mice. The following body of evidences supports a role for S1PR5 in BM egress of patrolling monocytes: (i) We previously showed

that S1PR5 was involved in NK-cell egress from the BM to blood [20, 23]. Moreover, several other members of the family of S1P receptors (S1PR1, S1PR3) are clearly involved in egress of different leukocyte subsets from central and peripheral lymphoid organs [24]. (ii) Ly6C− monocytes are reduced in BM sinusoids of S1pr5−/− mice, whereas they are preserved, or even slightly increased in Cx3cr1gfp/gfp mice, which only exhibit impaired survival of Ly6C− monocytes at the periphery. (iii) The phenotype of S1pr5−/− mice is very similar to that of Ccr2−/− mice in which monocyte egress from the BM has been shown to be clearly impaired [15]. In particular, the number of Ly6C− monocytes was normal in the BM of S1pr5−/− and Ccr2−/− mice but reduced in the blood circulation and in BM sinusoids.

7 ± 12 1 days The most common finding was a nodule

7 ± 12.1 days. The most common finding was a nodule selleck screening library (53.4%). Halo sign and air-crescent sign were rather rare (6.9%

and 2.7%, respectively). We evaluated the concordance of the clinical diagnosis of IA made by the infectious diseases consultant, the initiation of antifungal therapy and the consensus definitions of EORTC-MSG. The consultant doctor was aware of the results of the microbiological and radiological studies, however, not of the GM assays. There was 100% agreement between the diagnosis of the consultant doctor and EORTC-MSG case definitions in patients with proven and probable IA. On the other hand, 85% of the patients with possible IA and 9.1% of those without IA according to EORTC definitions were considered to have IA clinically by the consultant. Moreover, 95% of the patients with possible IA and 30.3% of the patients with no IA received amphotericin B either with a clinical suspicion of IA or empirically for prolonged fever of unknown origin. The mean duration of amphotericin B use was 31 days for episodes with proven and probable IA, 26.5 days for episodes with possible IA and 6.2 days for episodes without

IA. Ibrutinib in vitro A total of 545 serum samples were analysed by ELISA for GM levels. Regular sampling could not be carried out in all cases (in 22 of 58 episodes, more than 7 days elapsed in between two sampling dates at least once). During the course of the only proven IA, all of the serum GM levels were above 1.5 cut-off point (Fig. 1). The GM levels of the patient were positive at the beginning of the follow-up and soon rose to >10.0. Thoracic CT obtained 1 week later revealed a cavitary lesion in the lung and amphotericin B was started. Necrotic tissue in the nose and destruction

of the bone on CT were noted and biopsied. Septate hyphae were demonstrated in the histopathological samples of the necrotic nasal tissue. The patient died 80 days after her admission because of uncontrolled malignancy. None of the four probable episodes demonstrated consecutive GM positivities when the cut-off point was accepted as 1.5. One of them was positive consecutively when the cut-off was lowered to 1.0. All the probable cases had at least one selleck compound GM level equal to or above 0.7. The case of fusariosis had a GM level of 1.8 after 5 days of growth of the fungus in the blood, necrotic nasal mucosa and skin specimen cultures. Candidaemia was detected in a patient with no IA in a period when GM values of 4.3 and 2.5 were measured. The timing of GM positivity with respect to CT findings and culture growths could not be evaluated in all of the episodes. Lack of regular and timely CT imaging and high rate of false positivity and negativity were the obstacles to make this evaluation. However, the data of the only proven IA (Fig. 1) and the four probable IA episodes (Fig. 2) were summarised regarding the time elapsed between CT findings, culture growths and GM positivities.

Biopsies from patients with negative clinical elicitation reactio

Biopsies from patients with negative clinical elicitation reaction are projected towards positive values in the first selleck screening library dimension, and biopsies from patients with clinical positive elicitation reaction are projected towards negative values. Thus, the first axis distinguishes the skin from patients with positive clinical elicitation reactions from patients

with negative elicitation reactions. The group of psoriasis patients could not be distinguished in the PCA score plot from healthy individuals, regardless of clinical elicitation reactivity. To identify the probe sets that define the positive and negative directions of the axes and identify significantly over-represented annotation terms, an annotation analysis was applied. Annotation terms for biological processes are defined by the Gene Ontology Consortium. The annotation analysis revealed that terms

for biological processes related to immune response were over-represented in the annotation genes defining Midostaurin research buy the negative direction of the first PC axis. The negative direction of PC1 represents the activation of genes as a result of the cellular response to the allergen, DPCP. In the annotation analysis 129 different GO terms were found to be over-represented in genes up-regulated as a response to DPCP stimulation (clinical positive reactions). These GO terms were all related in some way to the inflammatory response and the genes annotated with the three most relevant terms are listed in Table 2. In contrast, the

positive direction of PC1 represents the clinical negative elicitation reactions as well as the vehicle-stimulated skin, and consequently very few GO terms were found to be over-represented in genes associated with this direction of PC1. In fact, only one term (GO:0048856), ‘Anatomical structure development’, was found to be significantly over-represented. This term is many very broad, and includes many thousands of gene products expressed in normal skin. To investigate further whether or not elicitation reactions were specifically down-regulated in psoriasis patients, probe sets from psoriasis patients with a negative elicitation reaction as well as healthy individuals also with a negative elicitation reaction were selected for further analysis using the t-test and subsequent correction for multiple testing with Bonferroni adjustment. When comparing the two groups, no significant difference was found in gene expression. In a controlled experimental sensitization study using the strong allergen DPCP, with a sensitization potential stronger than most allergens encountered in the environment, we believe we are the first to show lower sensitization ratios in two groups of psoriasis and diabetes type I patients, respectively, compared with healthy controls.

Unlike its human counterpart, the appendix of other mammals such

Unlike its human counterpart, the appendix of other mammals such as the rabbit has been recognized to play a pivotal role in systemic and mucosal immunity

AZD2014 [1–3]. The lifetime risk of appendicitis has been estimated to be 8·7% in men and 6·7% in women [4], making it the most common human abdominal emergency requiring surgical intervention. Uncertainty has persisted about the causality of acute appendicitis, although the most popular theory posits luminal obstruction and incarceration of secretions, leading to increased intraluminal pressure, culminating in mucosal ischaemia and bacterial overgrowth. Potential causes of appendiceal obstruction include lymphoid hyperplasia, faecoliths and malignancy [5]. Mortality due to acute appendicitis is around 0·3%, rising to 1·7% if perforation is present [6]. Although acute appendicitis can occur at any age, the peak age of incidence of appendicitis without perforation buy Y-27632 is in the second and third decades [7]. There has been a paucity of immunological data from appendicitis, in contrast to histopathological data. Similarly, the immunopathology and complex interactions between genetic predisposition, bacterial flora and the intestinal immune system in inflammatory bowel diseases (comprised of ulcerative colitis and Crohn’s disease)

have not been elucidated satisfactorily. The critical role of appendicitis followed by appendicectomy in ameliorating or preventing development of human ulcerative colitis [8–10] and Crohn’s disease [9,11] has been demonstrated reproducibly,

despite controversies surrounding that role in Crohn’s disease [12]. However, the protective effect is limited to patients having surgery before 20 years of age [10]. Additionally, studies in three different murine models including the T cell receptor-α mutant colitis model [13], the dextran sulphate sodium-induced colitis model [14] and the adoptive T lymphocyte transfer colitis model [15] have demonstrated that removal of the caecum prevented the development of experimental colitis. We recently developed a murine model of appendicitis by constructing a pouch and ligature – occluding the murine equivalent of BCKDHA the human appendix, the caecal patch, followed by appendicectomy (removal of the murine caecal patch) [16]. The appendiceal histopathology in this appendicitis model closely resembles human appendicitis and reveals an age-dependent protection against trinitrobenzene sulphonic acid (TNBS)-induced colitis offered by appendicitis and appendicectomy [16]. Appendicitis per se or appendectomy per se was not protective. This protection offered by appendicitis followed by appendicectomy was dependent upon appendiceal interleukin (IL)-10-producing CD4+ and CD8+ regulatory T lymphocytes which proliferated in the appendix and migrated to the distal colon (Ng et al., submitted).

Thus, alternative splicing represents an effective regulatory mec

Thus, alternative splicing represents an effective regulatory mechanism to fine-tune an immune response. The two novel isoforms of IKKε described here differentially modulate IRF3 and NF-κB signaling pathways. Both splice variants have lost the capability to activate IRF3, whereas only IKKε-sv2 is additionally unable to activate NF-κB-driven luciferase expression. Moreover,

the splice variants have the potential to inhibit the activation of NF-κB and/or IRF3 in a dominant-negative manner. Importantly, we could demonstrate that this effect led to enhanced infection spread of VSV-GFP in cells, RXDX-106 where IKKε-wt and one of the splice variants were coexpressed, whereas overexpression of IKKε-wt alone protected from infection. The relative abundance of the different IKKε isoforms might thus represent a novel regulatory mechanism controlling the different functions of this kinase. When analyzing expression patterns of the various IKKε isoforms,

we observed ubiquitous expression of all three variants in different human organs. Additionally, we found a remarkably high expression of IKKε-sv1 in testis and striking differences in the quantities of IKKε-sv2 expressed in PBMC from different donors. Since both variants inhibit IRF3 signaling, it would be conceivable that enhanced expression of IKKε-sv1 or IKKε-sv2 might lead to a decreased type-I IFN release and consequently to an increased susceptibility to viral infections. Since IKKε-sv1 still Saracatinib purchase activates NF-κB, a selective upregulation of this splice variant might even contribute to the development of virus-induced inflammatory diseases, because the antiviral response would be shifted to increased NF-κB-dependent expression of proinflammatory cytokines at the expense of type I IFN release. Interestingly, we observed in the two monocytic cell lines U937 and THP1 that infection with VSV leads to such a selective upregulation of IKKε-sv1. On the contrary, TNF upregulates in monocytes both splice variants likely leading to the inhibition of both IKKε functions. In MCF7 cells, however, TNF stimulation upregulates only IKKε-sv1,

thereby preserving the activation of NF-κB by IKKε-wt, which is essential for MCF7 cell proliferation 20. Surprisingly, the in-frame deletion of only 25 amino acids near the C-terminus of IKKε led to a complete failure to activate IRF3. Similar results were published Meloxicam by Gatot et al., who reported that deletion of 30 C-terminal amino acid results in the loss of IRF3 activation most likely due to the failure of truncated IKKε to interact with TANK 23. We could extend their results by demonstrating that binding of not only TANK but also of NAP1 and SINTBAD requires residues 383–407 of human IKKε representing a putative third coiled-coil motif. The domain structure of IKKε including proposed binding sites for potential interaction partners like the three scaffold proteins required for IRF3 activation is shown in Supporting Information Fig. S4.