We did recognize marker genes for aerobic methane oxidation in Tpm1-2 and Tplain. This

could be related to the slight overabundance of aerobic methanotrophic taxa (e.g. Methylococcus) in these samples. Interestingly, reads associated with ANME were two to three times less abundant in the metagenome from the Troll plain (Tplain), find more than in the Troll pockmark metagenomes (Tpm1-1, Tpm1-2, Tpm2 and Tpm3) where ANME accounted for up to 0.17% of the reads. ANME are less abundant in the Troll pockmarks than in active, methane-seeping pockmarks like Gullfaks, Tommeliten and Nyegga, where ANME sequences dominated the archaeal 16S libraries in surface sediments [6, 43]. In contrast, aerobic ammonia oxidizing Nitrosopumilus was clearly the most abundant archaeal genus in the Troll metagenomes. Nitrosopumilus and other Marine Archaeal Group I representatives have also previously been detected in the outskirts of hydrocarbon seepages, methane-hydrate sediments, oil spills and hydrothermal vents [41, 44–47]. Recently Marine Archaeal Group I representatives

were also identified as the dominating archaea in surface sediments (0–3 cm bsf) overlaying the zone of anaerobic methane oxidation (AOM) in sediments of an active methane seeping pockmark [48]. Since the Selleckchem 3MA zone for AOM is deeper in sediments with low level diffusion based seepage, compared

to sediments with active methane seepage [45], we can not exclude that AOM might be more important in deeper layers of the sediments. CO2 produced by anaerobic oxidation of methane [12] (or anaerobic degradation of other hydrocarbons ascending from the reservoir [19, 49]) in deeper layers of the Troll sediments would provide an additional carbon source for Nitrosopumilus, and other predominantly autotrophic nitrifiers, generally overrepresented in the oligotrophic Troll sediments. The predominantly autotrophic nitrifiers overrepresented in these oligotrophic sediments might therefore have a function in turning CO2, in part originating from hydrocarbons, back into organic carbon and thereby reducing Verteporfin purchase the emission of this greenhouse gas to the JSH-23 seawater. The nitrifiers could further play a role providing terminal electron acceptors for nitrate reducing hydrocarbon degraders (often found whiten the Betaproteobacteria[50, 51]). We did not find significantly overrepresented subsystems related to CO2 fixing pathways in our analysis. This could in part be related to difficulties in assigning metagenomic reads to function. Nitrosopumilus, the most abundant of the nitrifiers overrepresented in the Troll area, is assumed to use a variant of the 3-hydroxypropionate/4-hydroxybutyrate pathway (3HP/4HB) for CO2 fixation [52].